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Archiv-Übersicht     Angebot Nr. 13412

Angebotsdatum: 8. Mai 2019
Art der Stelle: Doktorarbeit / Diplomarbeit
Fachgebiet: Biologie > Zellbiologie
Titel des Themas: Spatial proteomics of protein quality control in mammalian cells

Institut: Zentrum für Molekulare Biologie der Universität Heidelberg
Adresse:
Frau Michael Knop
Im Neuenheimer Feld 282
69120 Heidelberg
Tel.: +496221544213   Fax.:
Bundesland: Baden-Württemberg
Homepage: http://www.knoplab.de
E-Mail Kontakt: mail

Beschreibung: Protein homeostasis involves control over spatio-temporal distribution of each individual protein species inside a cell. To gain insight into the principles of protein function and the mechanisms underlying the control systems that regulate protein homeostasis, is essential to study protein dynamics and degradation with high resolution using endogenous expressed proteins.

In this project we will use our novel CRISPR/Cas12a based methods for the efficient endogenous gene tagging of protein in mammalian cells (Fueller et al., 2019, Buchmuller et al., 2019) to address key functions of proteins involved in protein homoestasis regulation. The PhD project will first establish high throughput imaging methods to analyse the expression and spatial distribution a selected range of proteins with respect to their function in membranous organelles, in particular the secretory pathway. Subsequent work will focus on a molecular mechanistic understanding of their functions.

The project will involve tissue culture work using mammalian cell lines, CRISPR/Cas genome engineering, high content microscopy and image analysis, nextGen sequencing-based methods for genotype analysis and various other cell biological techniques, mathematical modelling.

Work will be conducted in a small team of experienced researcher. We offer an interdisciplinary environment that allows a talented candidate to rapidly complement her/his skills and knowledge and to discuss solutions of upcoming challenges during the project.
Methoden: Various tissue culture methods, high content microscopy, image data analysis and modelling of data, next Gen sequencing techniques and data analysis, statistical data analysis, various molecular biology techniques (oligoarrays, qPCR, standard cloning techniques, etc…).
Anfangsdatum: 1. Juli 2019
Geschätzte Dauer: 3-4 yrs
Bezahlung: E13
Papers: Buchmuller BC, Herbst K, Meurer M, Kirrmaier D, Sass E, Levy ED & Knop M (2018) Pooled clone collections by multiplexed CRISPR/Cas12a-assisted gene tagging in yeast. bioRxiv: 476804
Fueller J, Meurer M, Herbst K, Gubicza K, Kurtulmus B, Knopf JD, Kirrmaier D, Buchmuller BC, Pereira G, Lemberg MK & Knop M (2019) CRISPR/Cas12a-assisted PCR tagging of mammalian genes. biorxiv.org
Khmelinskii A, Blaszczak E, Pantazopoulou M, Fischer B, Omnus DJ, Le Dez G, Brossard A, Gunnarsson A, Barry JD, Meurer M, Kirrmaier D, Boone C, Huber W, Rabut G, Ljungdahl PO & Knop M (2014) Protein quality control at the inner nuclear membrane. Nature 516: 410–413

Sonstiges: Profile of candidate’s qualification:
We are looking for outstanding candidates that combine excellent wet lab skills in molecular biology and tissue culture with theoretical and bioinformatics knowledge and very good computing skills (image analysis using ImageJ and Matlab, DNA sequence analysis and statistical bioinformatics using R and python). The candidate needs to be well organized and able to handle complex tasks.

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